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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 846total RNA-seq
  • 207single cell RNA-seq
  • 29pCHi-C
  • 15small RNA-seq
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
  • 1snATAC-seq
Assay category
  • 1068Transcription
  • 15DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 189May, 2020
  • 172May, 2021
  • 162July, 2018
  • 123August, 2021
  • 110February, 2021
  • 89August, 2017
  • 49July, 2019
  • 47April, 2018
  • 43March, 2020
  • 26September, 2018
  • 23February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 9December, 2019
  • 5January, 2019
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1July, 2025
Available data
  • 2799bam
  • 2599bigWig
  • 1742bed narrowPeak
  • 1257fastq
  • 1123tsv
  • 1014bigBed narrowPeak
  • 376tagAlign
  • 312bed broadPeak
  • 276bigBed broadPeak
  • 247bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1122Homo sapiens
Biosample type
  • 620tissue
  • 255primary cell
  • 126in vitro differentiated cells
  • 119cell line
  • 3stem cell
Organ
  • connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • 156epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 10musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1019AMP
  • 98T1D
  • 6HPAP
Genome assembly (visualization)
  • 928hg19
  • 927GRCh38
Lab
  • 1010AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 149inconsistent ontology term
  • 9audit script error
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

1123 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
snATAC-seq
tissue
islet of Langerhans26161
liver14711
heart left ventricle3181
heart right ventricle1171
right cardiac atrium181
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
stem cell
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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