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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1237total RNA-seq
  • 141single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 13ATAC-seq
  • 3snDrop-seq
  • 1RNA microarray
Assay category
  • 1396Transcription
  • 13DNA accessibility
Target of assay
  • 3control
Date released
  • 527February, 2021
  • 189May, 2020
  • 167May, 2021
  • 131July, 2018
  • 123August, 2021
  • 89August, 2017
  • 60July, 2019
  • 42March, 2020
  • 25February, 2020
  • 19November, 2019
  • 16April, 2018
  • 15February, 2018
  • 14February, 2023
  • 13October, 2019
  • 5January, 2019
  • 4November, 2020
  • 3December, 2019
  • 2June, 2018
Available data
  • 3075bam
  • 2868bigWig
  • 1666bed narrowPeak
  • 1444tsv
  • 1101fastq
  • 966bigBed narrowPeak
  • 391tagAlign
  • 300bed broadPeak
  • 263bigBed broadPeak
  • 252bed bed3+
  • 161txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1444Homo sapiens
Biosample type
  • 1073tissue
  • 154primary cell
  • 129in vitro differentiated cells
  • 84cell line
  • 4stem cell
Organ
  • 478connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1348AMP
  • 96T1D
Genome assembly (visualization)
  • 1255hg19
  • 1254GRCh38
Lab
  • 1338AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 114inconsistent ontology term
  • 8audit script error
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

1444 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
primary cell
monocyte53
pancreatic cell7
mesenchymal cell6
osteoblast5
pancreatic stellate cell4
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
HepG2141
H1-hESC8
RCC 7860 vector11
early embryonic cell2
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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