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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1237total RNA-seq
  • 141single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 13ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 1RNA microarray
  • 1snATAC-seq
Assay category
  • 1396Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 533February, 2021
  • 189May, 2020
  • 167May, 2021
  • 131July, 2018
  • 123August, 2021
  • 89August, 2017
  • 60July, 2019
  • 42March, 2020
  • 25February, 2020
  • 19November, 2019
  • 16April, 2018
  • 15February, 2018
  • 14February, 2023
  • 13October, 2019
  • 5January, 2019
  • 4November, 2020
  • 3December, 2019
  • 2June, 2018
  • 1July, 2025
Available data
  • 3075bam
  • 2868bigWig
  • 1666bed narrowPeak
  • 1451tsv
  • 1101fastq
  • 966bigBed narrowPeak
  • 391tagAlign
  • 300bed broadPeak
  • 263bigBed broadPeak
  • 253bed bed3+
  • 161txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1450Homo sapiens
Biosample type
  • 1074tissue
  • 160primary cell
  • 129in vitro differentiated cells
  • 84cell line
  • 4stem cell
Organ
  • 478connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 10musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1349AMP
  • 96T1D
  • 6HPAP
Genome assembly (visualization)
  • 1255GRCh38
  • 1255hg19
Lab
  • 1338AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 114inconsistent ontology term
  • 8audit script error
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

1451 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
snATAC-seq
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
primary cell
monocyte53
pancreatic cell7
mesenchymal cell6
pancreatic alpha cell6
osteoblast5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
HepG2141
H1-hESC8
RCC 7860 vector11
early embryonic cell2
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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