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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 989total RNA-seq
  • 131single cell RNA-seq
  • 30pCHi-C
  • 16small RNA-seq
  • 12ATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1136Transcription
  • 12DNA accessibility
Target of assay
  • 3control
Date released
  • 527February, 2021
  • 189May, 2020
  • 133May, 2021
  • 122August, 2021
  • 61July, 2019
  • 39March, 2020
  • 24February, 2020
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 11July, 2018
  • 10April, 2018
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 2June, 2018
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1183Homo sapiens
Biosample type
  • 801tissue
  • 162primary cell
  • 131in vitro differentiated cells
  • 85cell line
  • 4stem cell
Organ
  • 478connective tissue
  • pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • 156epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1087AMP
  • 96T1D
Genome assembly (visualization)
  • 994GRCh38
  • 994hg19
Lab
  • 1078AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 9Bing Ren, UCSD
Audit category:
  • 111inconsistent ontology term
  • 9audit script error
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

1183 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
snDrop-seq
RNA microarray
tissue
adipose tissue3811
liver14711
bone tissue58
heart left ventricle3181
heart right ventricle1171
primary cell
monocyte53
pancreatic cell7
mesenchymal cell6
hepatocyte5
osteoblast5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
HepG2141
H1-hESC8
RCC 7860 vector11
early embryonic cell2
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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