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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
561
total RNA-seq
6
small RNA-seq
3
pCHi-C
Assay category
567
Transcription
Date released
386
February, 2021
144
May, 2020
19
July, 2019
9
August, 2021
5
January, 2019
3
February, 2020
3
March, 2020
1
October, 2019
Available data
1097
bam
1023
bigWig
570
tsv
494
fastq
435
bed narrowPeak
353
bigBed narrowPeak
90
tagAlign
65
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
tar
2
hic
1
bed bed3
1
csv
1
vcf
Organism
570
Homo sapiens
Biosample type
553
tissue
15
cell line
2
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
570
AMP
Genome assembly (visualization)
555
GRCh38
555
hg19
Lab
561
AMP-T2D consortium
9
Bing Ren, UCSD
organ_slims!
epithelium
BIOSAMPLE
ASSAY
570 results
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total RNA-seq
small RNA-seq
pCHi-C
tissue
adipose tissue
381
1
liver
147
1
1
subcutaneous adipose tissue
7
1
omental fat pad
5
1
right lobe of liver
3
2
+ See 1 more…
cell line
HepG2
14
1
primary cell
mesenchymal stem cell of adipose
1
1
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