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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
total RNA-seq
3
small RNA-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
230
Transcription
Date released
144
May, 2020
52
February, 2021
11
August, 2021
9
July, 2019
5
December, 2019
5
January, 2019
3
February, 2020
2
March, 2020
1
October, 2019
Available data
783
bam
707
bigWig
515
bed narrowPeak
465
fastq
383
bigBed narrowPeak
232
tsv
92
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
232
Homo sapiens
Biosample type
158
tissue
67
cell line
7
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
216
GRCh38
216
hg19
Lab
223
AMP-T2D consortium
9
Bing Ren, UCSD
organ_slims!
musculature of body
ovary
BIOSAMPLE
ASSAY
232 results
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Clear Filters
total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
liver
147
1
1
right lobe of liver
3
2
pulmonary artery
2
coronary artery
1
tibial artery
1
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
1
primary cell
hepatocyte
5
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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