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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
24
Transcription
Target of assay
3
control
Date released
12
February, 2020
11
July, 2019
2
March, 2020
1
October, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
26
Homo sapiens
Biosample type
23
tissue
3
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
bone element
eye
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
pCHi-C
tissue
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
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