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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
31
Transcription
Target of assay
3
control
Date released
15
February, 2020
11
July, 2019
5
October, 2019
2
March, 2020
Available data
357
bam
313
bigWig
295
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
33
Homo sapiens
Biosample type
30
tissue
3
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
33 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
pCHi-C
tissue
tibial nerve
5
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
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primary cell
cerebellar granule cell
2
Purkinje cell
1
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