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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
547
total RNA-seq
74
single cell RNA-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
ATAC-seq
1
RNA microarray
Assay category
624
Transcription
6
DNA methylation
1
DNA accessibility
Date released
481
February, 2021
35
April, 2018
35
July, 2018
26
September, 2018
21
July, 2019
7
May, 2021
6
December, 2019
5
March, 2020
4
November, 2020
3
August, 2018
3
October, 2019
2
February, 2020
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
910
bam
871
bigWig
634
tsv
358
fastq
226
bed narrowPeak
104
bigBed narrowPeak
80
zippedFastqFolder
48
bed bed3+
32
bed broadPeak
31
bigBed broadPeak
29
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3
6
bedpe bed3+
6
hic
4
bed bedgraph
3
cool
3
hdf5
1
tar
Organism
634
Homo sapiens
Biosample type
460
tissue
131
primary cell
35
cell line
7
in vitro differentiated cells
1
stem cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
0
skin of body
Project
626
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
621
hg19
620
GRCh38
Lab
628
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
634 results
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total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
pCHi-C
ATAC-seq
RNA microarray
tissue
adipose tissue
381
1
bone tissue
58
subcutaneous adipose tissue
7
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
+ See 2 more…
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 18 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
4
cardiac fibroblast
1
endothelial cell
1
intermediate endothelial cell
1
stem cell
mesenchymal stem cell
1
See all biosamples
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