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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
70
single cell RNA-seq
6
WGBS
1
ATAC-seq
1
RNA microarray
Assay category
167
Transcription
6
DNA methylation
1
DNA accessibility
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
8
August, 2021
8
May, 2021
7
October, 2019
6
December, 2019
5
July, 2019
4
February, 2018
3
August, 2018
3
March, 2020
2
February, 2023
2
October, 2018
1
February, 2020
1
June, 2018
1
November, 2019
Available data
391
bam
359
bigWig
280
fastq
190
bed narrowPeak
175
tsv
102
bigBed narrowPeak
80
zippedFastqFolder
26
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
175
Homo sapiens
Biosample type
116
primary cell
43
cell line
8
in vitro differentiated cells
8
tissue
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
167
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
165
hg19
164
GRCh38
Lab
169
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 11 more…
cell line
EndoC_BH1
33
1
H1-hESC
8
glomerular visceral epithelial cell
1
in vitro differentiated cells
pancreatic endoderm
4
endothelial cell
1
intermediate endothelial cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
tibial nerve
5
pigmented layer of retina
2
renal glomerulus
1
See all biosamples
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