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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 78total RNA-seq
  • 70single cell RNA-seq
  • 6WGBS
  • 1ATAC-seq
  • 1RNA microarray
Assay category
  • 148Transcription
  • 6DNA methylation
  • 1DNA accessibility
Date released
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 26September, 2018
  • 6December, 2019
  • 6May, 2021
  • 5July, 2019
  • 3August, 2018
  • 3March, 2020
  • 3October, 2019
  • 2February, 2023
  • 2October, 2018
  • 1June, 2018
  • 1November, 2019
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 156Homo sapiens
Biosample type
  • 116primary cell
  • 35cell line
  • 3tissue
  • 2in vitro differentiated cells
Organ
  • 478connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • 156epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 148AMP
  • 6HPAP
  • 2T1D
Genome assembly (visualization)
  • 147hg19
  • 146GRCh38
Lab
  • 150AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
Audit category:
  • 36inconsistent ontology term
  • 1audit script error
BIOSAMPLE
ASSAY

156 results

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Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
pancreatic delta cell11
cell line
EndoC_BH1331
glomerular visceral epithelial cell1
tissue
pigmented layer of retina2
renal glomerulus1
in vitro differentiated cells
endothelial cell1
intermediate endothelial cell1
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