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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 11total RNA-seq
  • 5single cell RNA-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 2pCHi-C
  • 1small RNA-seq
Assay category
  • 17Transcription
Date released
  • 8February, 2021
  • 6July, 2019
  • 6October, 2019
  • 2December, 2019
  • 2March, 2020
Available data
  • 183bed narrowPeak
  • 144bam
  • 131bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 24Homo sapiens
Biosample type
  • 12tissue
  • 6cell line
  • 6primary cell
Organ
  • 478connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • 156epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 24AMP
Genome assembly (visualization)
  • 12GRCh38
  • 12hg19
Lab
  • 24AMP-T2D consortium
Audit category:
  • 7audit script error
  • 5inconsistent ontology term
BIOSAMPLE
ASSAY

24 results

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Clear Filters
total RNA-seq
single cell RNA-seq
snDrop-seq
RNA microarray
pCHi-C
small RNA-seq
tissue
kidney5
metanephros11
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
cell line
RCC 7860 vector11
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
RCC 7860 VHL1
glomerular visceral epithelial cell1
primary cell
epithelial cell of proximal tubule1
glomerular endothelial cell1
kidney epithelial cell1
kidney glomerular epithelial cell1
kidney tubule cell1
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