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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 326total RNA-seq
  • 80single cell RNA-seq
  • 6WGBS
  • 2ATAC-seq
  • 2small RNA-seq
  • 1pCHi-C
Assay category
  • 408Transcription
  • 6DNA methylation
  • 2DNA accessibility
Date released
  • 153July, 2018
  • 89August, 2017
  • 40May, 2021
  • 39April, 2018
  • 32February, 2021
  • 26September, 2018
  • 20November, 2019
  • 6March, 2020
  • 4July, 2019
  • 3August, 2018
  • 2October, 2018
  • 1August, 2021
  • 1February, 2020
  • 1June, 2018
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 417Homo sapiens
Biosample type
  • 275tissue
  • 108primary cell
  • 34cell line
Organ
  • 478connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • 156epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 409AMP
  • 6HPAP
  • 2T1D
Genome assembly (visualization)
  • 408hg19
  • 406GRCh38
Lab
  • 410AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
Audit category:
  • 39inconsistent ontology term
BIOSAMPLE
ASSAY

417 results

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Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans26161
body of pancreas32
pancreas11
primary cell
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
pancreatic delta cell11
cell line
EndoC_BH1331
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