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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1247total RNA-seq
  • 208single cell RNA-seq
  • 18small RNA-seq
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1473Transcription
Date released
  • 552February, 2021
  • 173May, 2021
  • 164July, 2018
  • 143May, 2020
  • 123August, 2021
  • 89August, 2017
  • 49April, 2018
  • 49July, 2019
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 13March, 2020
  • 12October, 2019
  • 9December, 2019
  • 4February, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 1478tsv
  • 1342bam
  • 1337bigWig
  • 373fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1478Homo sapiens
Biosample type
  • 1051tissue
  • 190primary cell
  • 129in vitro differentiated cells
  • 108cell line
Organ
  • 470connective tissue
  • 408pancreas
  • 399adipose tissue
  • 167liver
  • 161heart
  • 144epithelium
  • 65blood vessel
  • 65vasculature
  • 58bone element
  • 56artery
  • 21brain
  • 18kidney
  • 14embryo
  • 7musculature of body
  • 5eye
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1425AMP
  • 53T1D
Genome assembly (visualization)
  • 1329GRCh38
  • 1329hg19
Lab
  • 1417AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 133inconsistent ontology term
  • 9audit script error
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1478 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
snDrop-seq
RNA microarray
tissue
adipose tissue381
islet of Langerhans2616
liver1471
bone tissue58
heart left ventricle318
primary cell
monocyte51
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG29
H1-hESC8
early embryonic cell2
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