Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 68total RNA-seq
  • 31pCHi-C
  • 14ATAC-seq
  • 6WGBS
  • 3single cell RNA-seq
Assay category
  • 71Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 46May, 2020
  • 32March, 2020
  • 16July, 2019
  • 12February, 2023
  • 7February, 2021
  • 5January, 2019
  • 4October, 2019
Available data
  • 2057bam
  • 1838bigWig
  • 1817bed narrowPeak
  • 1042bigBed narrowPeak
  • 992fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 5txt
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 122Homo sapiens
Biosample type
  • 80primary cell
  • 25tissue
  • 11cell line
  • 4stem cell
  • 2in vitro differentiated cells
Organ
  • 12epithelium
  • 9pancreas
  • 8connective tissue
  • 7heart
  • 7liver
  • 6kidney
  • 5brain
  • 4limb
  • 4nerve
  • 3blood vessel
  • 3vasculature
  • 2adipose tissue
  • 2artery
  • 2intestine
  • 2musculature of body
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 71AMP
  • 45T1D
  • 6HPAP
Genome assembly (visualization)
  • 73hg19
  • 71GRCh38
Lab
  • 71AMP-T2D consortium
  • 45Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 17inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

122 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
pCHi-C
ATAC-seq
WGBS
single cell RNA-seq
primary cell
pancreatic alpha cell6
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
tissue
tibial nerve4
Ammon's horn1
adipose tissue1
adrenal gland1
aorta1
cell line
HepG251
EndoC_BH11
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
embryonic stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego