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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1147total RNA-seq
  • 126single cell RNA-seq
  • 8pCHi-C
  • 7small RNA-seq
  • 6WGBS
  • 2RNA microarray
  • 1ATAC-seq
  • 1snDrop-seq
Assay category
  • 1280Transcription
  • 6DNA methylation
  • 1DNA accessibility
Target of assay
  • 3control
Date released
  • 551February, 2021
  • 148May, 2020
  • 120July, 2018
  • 115August, 2021
  • 115May, 2021
  • 89August, 2017
  • 31July, 2019
  • 26September, 2018
  • 20March, 2020
  • 20November, 2019
  • 14February, 2018
  • 13October, 2019
  • 10April, 2018
  • 9December, 2019
  • 5January, 2019
  • 4February, 2023
  • 4November, 2020
  • 2June, 2018
  • 2October, 2018
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 1298Homo sapiens
Biosample type
  • 990tissue
  • 119cell line
  • 97primary cell
  • 89in vitro differentiated cells
  • 3stem cell
Organ
  • 457connective tissue
  • 391adipose tissue
  • 340pancreas
  • 170liver
  • 152heart
  • 87epithelium
  • 62blood vessel
  • 62vasculature
  • 58bone element
  • 54artery
  • 14kidney
  • 12embryo
  • 4brain
  • 4eye
  • 4limb
  • 4nerve
  • 2musculature of body
  • 1mammary gland
Project
  • 1258AMP
  • 34T1D
  • 6HPAP
Genome assembly (visualization)
  • 1163hg19
  • 1162GRCh38
Lab
  • 1251AMP-T2D consortium
  • 32Kyle Gaulton, UCSD
  • 9Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 113inconsistent ontology term
  • 9audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1298 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
WGBS
RNA microarray
ATAC-seq
snDrop-seq
tissue
adipose tissue381
islet of Langerhans258
liver1451
bone tissue58
heart left ventricle318
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
primary cell
monocyte28
pancreatic alpha cell1016
pancreatic beta cell101
pancreatic acinar cell44
hepatocyte5
in vitro differentiated cells
cardiomyocytes47
cardiac precursors (cardiac muscle cell)19
adipocyte4
cardiomyocytes (cardiac muscle cell)22
pancreatic endoderm4
stem cell
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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