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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1264total RNA-seq
  • 205single cell RNA-seq
  • 26pCHi-C
  • 18small RNA-seq
  • 13ATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1487Transcription
  • 13DNA accessibility
Date released
  • 535February, 2021
  • 188May, 2020
  • 173May, 2021
  • 163July, 2018
  • 115August, 2021
  • 89August, 2017
  • 61July, 2019
  • 49April, 2018
  • 35March, 2020
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 15February, 2018
  • 7October, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2December, 2019
  • 2October, 2018
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1531Homo sapiens
Biosample type
  • 1073tissue
  • 254primary cell
  • 107in vitro differentiated cells
  • 93cell line
  • 4stem cell
Organ
  • 478connective tissue
  • 408pancreas
  • 401adipose tissue
  • 167heart
  • 162liver
  • 141epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 22brain
  • 18kidney
  • 9musculature of body
  • 7limb
  • 6embryo
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1435AMP
  • 96T1D
Genome assembly (visualization)
  • 1346hg19
  • 1345GRCh38
Lab
  • 1425AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 118inconsistent ontology term
  • 7audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1531 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans26161
liver14611
bone tissue58
heart left ventricle3181
primary cell
monocyte53
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
neural progenitor cell7
adipocyte4
pancreatic endoderm4
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG29
early embryonic cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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