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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 219total RNA-seq
  • 91single cell RNA-seq
  • 28pCHi-C
  • 14ATAC-seq
  • 11small RNA-seq
  • 6WGBS
  • 2snDrop-seq
Assay category
  • 321Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 58May, 2021
  • 45July, 2018
  • 42May, 2020
  • 39April, 2018
  • 38July, 2019
  • 35March, 2020
  • 32February, 2021
  • 25February, 2020
  • 16August, 2021
  • 12February, 2023
  • 12October, 2019
  • 7December, 2019
  • 5January, 2019
  • 3August, 2018
  • 1February, 2018
  • 1June, 2018
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 371Homo sapiens
Biosample type
  • 189primary cell
  • 89tissue
  • 66in vitro differentiated cells
  • 26cell line
  • 1stem cell
Organ
  • 86pancreas
  • 84epithelium
  • 26brain
  • 21connective tissue
  • 17heart
  • 16kidney
  • 16liver
  • 10adipose tissue
  • 10embryo
  • 7musculature of body
  • 6blood vessel
  • 6vasculature
  • 4artery
  • 3limb
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 299AMP
  • 66T1D
  • 6HPAP
Genome assembly (visualization)
  • 295hg19
  • 293GRCh38
Lab
  • 300AMP-T2D consortium
  • 64Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
Audit category:
  • 69inconsistent ontology term
  • 2audit script error
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

371 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
small RNA-seq
WGBS
snDrop-seq
primary cell
monocyte25
pancreatic alpha cell116
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans361
heart31
liver31
frontal cortex21
subcutaneous adipose tissue3
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
cardiomyocytes12
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
H1-hESC8
HepG251
EndoC_BH121
RCC 7860 vector11
MCF-71
stem cell
mesenchymal stem cell1
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