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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
total RNA-seq
85
single cell RNA-seq
23
pCHi-C
13
ATAC-seq
11
small RNA-seq
2
snDrop-seq
Assay category
264
Transcription
13
DNA accessibility
Date released
58
May, 2021
44
July, 2018
41
May, 2020
39
April, 2018
34
July, 2019
25
February, 2020
25
March, 2020
12
February, 2023
8
August, 2021
8
February, 2021
3
August, 2018
3
October, 2019
1
February, 2018
1
June, 2018
Available data
483
bam
467
bigWig
302
tsv
173
bed narrowPeak
129
fastq
116
tagAlign
68
bed bed3+
40
bigBed narrowPeak
26
bed broadPeak
24
bigBed broadPeak
8
hic
7
bedpe bed3+
6
bed bed3
5
txt
3
cool
2
csv
1
bedpe
1
tagAlign bed3+
Organism
302
Homo sapiens
Biosample type
173
primary cell
86
tissue
42
in vitro differentiated cells
1
stem cell
Organ
77
pancreas
69
epithelium
22
brain
21
connective tissue
16
heart
10
adipose tissue
10
kidney
7
musculature of body
6
blood vessel
6
vasculature
4
artery
4
liver
3
limb
2
embryo
2
intestine
1
adrenal gland
1
esophagus
1
eye
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
238
AMP
64
T1D
Genome assembly (visualization)
239
hg19
238
GRCh38
Lab
237
AMP-T2D consortium
64
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
BIOSAMPLE
ASSAY
302 results
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total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
small RNA-seq
snDrop-seq
primary cell
monocyte
25
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
10
pancreatic ductal cell
9
+ See 51 more…
tissue
islet of Langerhans
3
6
1
frontal cortex
2
1
heart
2
1
liver
2
1
subcutaneous adipose tissue
3
+ See 52 more…
in vitro differentiated cells
cardiomyocytes
12
induced pluripotent stem cell
9
neural progenitor cell
7
cardiomyocytes (cardiac muscle cell)
1
1
cardiac fibroblast
1
+ See 11 more…
stem cell
mesenchymal stem cell
1
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