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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 168total RNA-seq
  • 85single cell RNA-seq
  • 23pCHi-C
  • 13ATAC-seq
  • 11small RNA-seq
  • 2snDrop-seq
Assay category
  • 264Transcription
  • 13DNA accessibility
Date released
  • 58May, 2021
  • 44July, 2018
  • 41May, 2020
  • 39April, 2018
  • 34July, 2019
  • 25February, 2020
  • 25March, 2020
  • 12February, 2023
  • 8August, 2021
  • 8February, 2021
  • 3August, 2018
  • 3October, 2019
  • 1February, 2018
  • 1June, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 302Homo sapiens
Biosample type
  • 173primary cell
  • 86tissue
  • 42in vitro differentiated cells
  • 1stem cell
Organ
  • 77pancreas
  • 69epithelium
  • 22brain
  • 21connective tissue
  • 16heart
  • 10adipose tissue
  • 10kidney
  • 7musculature of body
  • 6blood vessel
  • 6vasculature
  • 4artery
  • 4liver
  • 3limb
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 238AMP
  • 64T1D
Genome assembly (visualization)
  • 239hg19
  • 238GRCh38
Lab
  • 237AMP-T2D consortium
  • 64Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 37inconsistent ontology term
BIOSAMPLE
ASSAY

302 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
small RNA-seq
snDrop-seq
primary cell
monocyte25
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans361
frontal cortex21
heart21
liver21
subcutaneous adipose tissue3
in vitro differentiated cells
cardiomyocytes12
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)11
cardiac fibroblast1
stem cell
mesenchymal stem cell1
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