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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 51total RNA-seq
  • 6WGBS
  • 6single cell RNA-seq
  • 5pCHi-C
  • 1ATAC-seq
Assay category
  • 57Transcription
  • 6DNA methylation
  • 1DNA accessibility
Target of assay
  • 3control
Date released
  • 24February, 2021
  • 10March, 2020
  • 9October, 2019
  • 8August, 2021
  • 7December, 2019
  • 5January, 2019
  • 4July, 2019
  • 1July, 2018
  • 1May, 2020
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 69Homo sapiens
Biosample type
  • 26cell line
  • 24in vitro differentiated cells
  • 16primary cell
  • 3tissue
Organ
  • 15epithelium
  • 12liver
  • 9pancreas
  • 8embryo
  • 6kidney
  • 4brain
  • 1heart
  • 1mammary gland
Project
  • 61AMP
  • 6HPAP
  • 2T1D
Genome assembly (visualization)
  • 56hg19
  • 55GRCh38
Lab
  • 63AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
Audit category:
  • 32inconsistent ontology term
  • 2audit script error
BIOSAMPLE
ASSAY

69 results

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Clear Filters
total RNA-seq
WGBS
single cell RNA-seq
pCHi-C
ATAC-seq
cell line
H1-hESC8
HepG251
EndoC_BH121
RCC 7860 vector11
MCF-71
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
cardiomyocytes (cardiac muscle cell)22
lymphocyte of B lineage (iPSC)1
primary cell
pancreatic alpha cell6
hepatocyte5
cerebellar granule cell2
Purkinje cell1
pancreatic cell1
tissue
brain1
heart1
liver1
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