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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1096total RNA-seq
  • 120single cell RNA-seq
  • 7small RNA-seq
  • 3pCHi-C
  • 2RNA microarray
  • 1snDrop-seq
Assay category
  • 1223Transcription
Date released
  • 527February, 2021
  • 147May, 2020
  • 119July, 2018
  • 115May, 2021
  • 107August, 2021
  • 89August, 2017
  • 27July, 2019
  • 26September, 2018
  • 20November, 2019
  • 14February, 2018
  • 10April, 2018
  • 10March, 2020
  • 4February, 2023
  • 4November, 2020
  • 4October, 2019
  • 2December, 2019
  • 2June, 2018
  • 2October, 2018
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 1229Homo sapiens
Biosample type
  • 987tissue
  • 93cell line
  • 81primary cell
  • 65in vitro differentiated cells
  • 3stem cell
Organ
  • 457connective tissue
  • 391adipose tissue
  • 331pancreas
  • 158liver
  • 151heart
  • 72epithelium
  • 62blood vessel
  • 62vasculature
  • 58bone element
  • 54artery
  • 8kidney
  • 4embryo
  • 4eye
  • 4limb
  • 4nerve
  • 2musculature of body
Project
  • 1197AMP
  • 32T1D
Genome assembly (visualization)
  • 1107GRCh38
  • 1107hg19
Lab
  • 1188AMP-T2D consortium
  • 32Kyle Gaulton, UCSD
  • 9Bing Ren, UCSD
Audit category:
  • 81inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

1229 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
pCHi-C
RNA microarray
snDrop-seq
tissue
adipose tissue381
islet of Langerhans258
liver1441
bone tissue58
heart left ventricle318
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG29
early embryonic cell1
primary cell
monocyte28
pancreatic alpha cell101
pancreatic beta cell101
pancreatic acinar cell44
pancreatic ductal cell41
in vitro differentiated cells
cardiomyocytes47
adipocyte4
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
stem cell
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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