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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
68
Transcription
3
DNA accessibility
Date released
89
February, 2021
57
August, 2021
6
May, 2022
3
February, 2023
1
October, 2022
Available data
3116
bam
2877
bigWig
1558
bed narrowPeak
1424
tsv
1356
fastq
901
bigBed narrowPeak
377
tagAlign
246
bed broadPeak
222
bigBed broadPeak
209
bed bed3+
156
txt
153
zippedFastqFolder
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
18
bedpe bed3+
18
hic
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
155
Homo sapiens
Biosample type
152
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
skeleton
musculature of body
Project
156
AMP
Genome assembly (visualization)
3
hg19
Lab
90
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
files.file_type!
bed bed3
organ_slims!
heart
musculature of body
skeleton
BIOSAMPLE
ASSAY
156 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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