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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
8
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
67
Transcription
1
DNA accessibility
Date released
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
2577
bam
2396
bigWig
1591
bed narrowPeak
1292
fastq
1014
tsv
915
bigBed narrowPeak
275
bed broadPeak
272
tagAlign
247
bigBed broadPeak
236
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
9
bed bed3
4
tar
bed bedgraph
3
cool
2
csv
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
68
Homo sapiens
Biosample type
68
tissue
1
cell line
Organ
57
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
69
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
6
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
bed bedgraph
month_released!
February, 2021
organ_slims!
brain
gonad
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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