Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 59total RNA-seq
  • 13single cell RNA-seq
  • 1MPRA
  • 1snATAC-seq
Assay category
  • 72Transcription
  • 1DNA accessibility
Date released
  • 89February, 2021
  • 57August, 2021
  • 7May, 2022
  • 4February, 2023
  • 1October, 2022
Available data
  • 3392bam
  • bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 157Homo sapiens
Biosample type
  • 157tissue
  • 1cell line
Organ
  • 88bone element
  • 62kidney
  • 6pancreas
  • 4skeleton
  • 1musculature of body
Project
  • 158AMP
Genome assembly (visualization)
  • 1hg19
Lab
  • 95AMP-T2D consortium
  • 57Katalin Susztak, Upenn
  • 6Kyle Gaulton, UCSD
Audit category:
  • 84inconsistent ontology term
  • 6audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

158 results

search-icontable-tab-icon
Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element84
kidney4913
islet of Langerhans6
acetabular part of hip bone1
ilium1
cell line
MIN61
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego