Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
3188
bam
2949
bigWig
1685
bed narrowPeak
1504
tsv
1334
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
271
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
151
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
4
skeleton
1
musculature of body
Project
155
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
files.file_type!
tagAlign bed3+
lab.title!
Kyle Gaulton, UCSD
Xin Sun, UCSD
BIOSAMPLE
ASSAY
155 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
Download