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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 59total RNA-seq
  • 13single cell RNA-seq
  • 3ATAC-seq
  • 1MPRA
  • 1snATAC-seq
Assay category
  • 72Transcription
  • 4DNA accessibility
Date released
  • 89February, 2021
  • 57August, 2021
  • 7February, 2023
  • 7May, 2022
  • 1October, 2022
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 160Homo sapiens
Biosample type
  • 157tissue
  • 3in vitro differentiated cells
  • 1cell line
Organ
  • 88bone element
  • 62kidney
  • 6pancreas
  • 4skeleton
  • 1musculature of body
Project
  • 161AMP
Genome assembly (visualization)
  • 4hg19
Lab
  • 95AMP-T2D consortium
  • 57Katalin Susztak, Upenn
  • 6Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 85inconsistent ontology term
  • 6audit script error
files.file_type!
  • xls
BIOSAMPLE
ASSAY

161 results

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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element84
kidney4913
islet of Langerhans6
acetabular part of hip bone1
ilium1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
cell line
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