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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
ATAC-seq
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
68
DNA accessibility
Date released
121
August, 2021
89
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
3298
bam
3089
bigWig
1745
bed narrowPeak
1599
tsv
1259
fastq
992
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
258
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
224
Homo sapiens
Biosample type
221
tissue
3
in vitro differentiated cells
1
cell line
Organ
126
kidney
88
bone element
6
pancreas
4
skeleton
1
musculature of body
Project
225
AMP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
121
Katalin Susztak, Upenn
95
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
month_released!
December, 2017
January, 2018
organ_slims!
small intestine
BIOSAMPLE
ASSAY
225 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
64
49
13
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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