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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
3019
bam
2851
bigWig
1637
bed narrowPeak
1454
tsv
903
fastq
895
bigBed narrowPeak
398
tagAlign
310
bed broadPeak
275
bigBed broadPeak
265
bed bed3+
155
txt
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
23
hic
22
bedpe bed3+
18
zippedFastqFolder
12
bed bed3
7
bed bedgraph
6
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
151
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
4
skeleton
1
musculature of body
Project
155
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
155 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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