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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
5
single cell RNA-seq
4
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
4
DNA accessibility
Date released
89
February, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
2372
bam
2187
bigWig
1183
tsv
1182
bed narrowPeak
798
fastq
734
bigBed narrowPeak
273
bed broadPeak
262
bigBed broadPeak
240
tagAlign
238
bed bed3+
98
txt
73
zippedFastqFolder
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
15
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
97
Homo sapiens
Biosample type
94
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
98
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2018
organ_slims!
pancreas
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
98 results
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RNA microarray
single cell RNA-seq
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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