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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 10total RNA-seq
  • 5single cell RNA-seq
  • 3ATAC-seq
  • 1MPRA
  • 1snATAC-seq
Assay category
  • 15Transcription
  • 4DNA accessibility
Date released
  • 89February, 2021
  • 7February, 2023
  • 7May, 2022
  • 1October, 2022
Available data
  • 3392bam
  • 3169bigWig
  • 1753bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 153zippedFastqFolder
  • 104txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 103Homo sapiens
Biosample type
  • 100tissue
  • 3in vitro differentiated cells
  • 1cell line
Organ
  • 88bone element
  • 6pancreas
  • 5kidney
  • 4skeleton
  • 1musculature of body
Project
  • 104AMP
Genome assembly (visualization)
  • 4hg19
Lab
  • 95AMP-T2D consortium
  • Katalin Susztak, Upenn
  • 6Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 85inconsistent ontology term
  • 6audit script error
lab.title!
  • Katalin Susztak, Upenn
BIOSAMPLE
ASSAY

104 results

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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element84
islet of Langerhans6
kidney5
acetabular part of hip bone1
ilium1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
cell line
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