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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
66
Transcription
3
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
1
October, 2022
Available data
3029
bam
2791
bigWig
1542
bed narrowPeak
1494
tsv
1229
fastq
913
bigBed narrowPeak
299
tagAlign
267
bed broadPeak
243
bigBed broadPeak
228
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
153
Homo sapiens
Biosample type
150
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
4
skeleton
musculature of body
Project
154
AMP
Genome assembly (visualization)
3
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2018
organ_slims!
musculature of body
spleen
BIOSAMPLE
ASSAY
154 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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