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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 10total RNA-seq
  • 3ATAC-seq
  • 1MPRA
  • 1snATAC-seq
Assay category
  • 10Transcription
  • 4DNA accessibility
Date released
  • 84February, 2021
  • 7February, 2023
  • 7May, 2022
  • 1October, 2022
Available data
  • 3248bam
  • 3038bigWig
  • 1634bed narrowPeak
  • 1576tsv
  • 1358fastq
  • 938bigBed narrowPeak
  • 398tagAlign
  • 244bed broadPeak
  • 207bigBed broadPeak
  • 195bed bed3+
  • 153zippedFastqFolder
  • 99txt
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 3csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 98Homo sapiens
Biosample type
  • 95tissue
  • 3in vitro differentiated cells
  • 1cell line
Organ
  • 88bone element
  • kidney
  • 6pancreas
  • 4skeleton
  • 1musculature of body
Project
  • 99AMP
Genome assembly (visualization)
  • 4hg19
Lab
  • 90AMP-T2D consortium
  • 6Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 85inconsistent ontology term
  • 1audit script error
organ_slims!
  • kidney
BIOSAMPLE
ASSAY

99 results

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Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element84
islet of Langerhans6
acetabular part of hip bone1
ilium1
ischium1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
cell line
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