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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 55total RNA-seq
  • 13single cell RNA-seq
  • 3ATAC-seq
  • 1MPRA
Assay category
  • 68Transcription
  • 3DNA accessibility
Date released
  • 89February, 2021
  • 57August, 2021
  • 6May, 2022
  • 3February, 2023
  • 1October, 2022
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 155Homo sapiens
Biosample type
  • 152tissue
  • 3in vitro differentiated cells
  • 1cell line
Organ
  • 84bone element
  • 62kidney
  • 6pancreas
Project
  • 156AMP
Genome assembly (visualization)
  • 3hg19
Lab
  • 90AMP-T2D consortium
  • 57Katalin Susztak, Upenn
  • 6Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 85inconsistent ontology term
  • 5audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

156 results

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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element84
kidney4913
islet of Langerhans6
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
cell line
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