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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 59total RNA-seq
  • 13single cell RNA-seq
  • 1MPRA
  • 1snATAC-seq
Assay category
  • 72Transcription
  • 1DNA accessibility
Date released
  • 89February, 2021
  • 57August, 2021
  • 7May, 2022
  • 4February, 2023
  • 1October, 2022
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 157Homo sapiens
Biosample type
  • 157tissue
  • 1cell line
Organ
  • 88bone element
  • 62kidney
  • 6pancreas
  • 4skeleton
  • 1musculature of body
Project
  • 158AMP
Genome assembly (visualization)
  • 1hg19
Lab
  • 95AMP-T2D consortium
  • 57Katalin Susztak, Upenn
  • 6Kyle Gaulton, UCSD
Audit category:
  • 84inconsistent ontology term
  • 6audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

158 results

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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element84
kidney4913
islet of Langerhans6
acetabular part of hip bone1
ilium1
cell line
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