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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 246ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 246DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 93histone
  • 93histone modification
  • 53control
  • 49broad histone mark
  • 44narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 67August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 261fastq
  • 255bam
  • 213bigWig
  • 198bed narrowPeak
  • 146bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 254Homo sapiens
Biosample type
  • 113cell line
  • 54tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 121liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 3blood vessel
  • 2connective tissue
  • 2musculature of body
  • 1adipose tissue
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 261AMP
Genome assembly (visualization)
  • 224hg19
  • 188GRCh38
Lab
  • 261AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.mapped_read_length!
  • 36
BIOSAMPLE
ASSAY

261 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver521
body of pancreas2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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