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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 371ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 371DNA binding
  • 163Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 75control
  • 65histone
  • 65histone modification
  • 34broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 145August, 2017
  • 72September, 2018
  • 50November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 557fastq
  • 555bam
  • 478bigWig
  • 279bed narrowPeak
  • 240bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 551Homo sapiens
Biosample type
  • 227cell line
  • 198tissue
  • 115primary cell
  • 17in vitro differentiated cells
Organ
  • 257liver
  • 219pancreas
  • 78epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 557AMP
Genome assembly (visualization)
  • 476hg19
  • 473GRCh38
Lab
  • 556AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.mapped_read_length!
  • 50
BIOSAMPLE
ASSAY

557 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans6891
liver451
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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