Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32pCHi-C
  • 15total RNA-seq
  • 10Hi-C
  • 4ATAC-seq
  • 3ChIP-seq
Assay category
  • 15Transcription
  • 103D chromatin structure
  • 4DNA accessibility
  • 3DNA binding
Target of assay
  • 3histone
  • 3histone modification
  • 3narrow histone mark
Date released
  • 715February, 2021
  • 411August, 2017
  • 406November, 2017
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 74October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 45tsv
  • 20bigWig
  • 16bam
  • 12bedpe bed3+
  • 10hic
  • 3bed narrowPeak
  • 2ibed
Organism
  • 64Homo sapiens
Biosample type
  • 40tissue
  • 11cell line
  • 8in vitro differentiated cells
  • 4stem cell
  • 1primary cell
Organ
  • 14pancreas
  • 7heart
  • 6epithelium
  • 5musculature of body
  • 4blood vessel
  • 4vasculature
  • 3liver
  • 2brain
  • 2connective tissue
  • 2intestine
  • 2kidney
  • 1adipose tissue
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 57AMP
  • 7T1D
Genome assembly (visualization)
  • 32hg19
  • 16GRCh38
Lab
  • 64AMP-T2D consortium
Audit category:
  • 17inconsistent ontology term
files.mapped_read_length!
  • 51
BIOSAMPLE
ASSAY

64 results

search-icontable-tab-icon
Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans222
psoas muscle122
aorta111
heart left ventricle111
heart right ventricle111
liver111
pancreas111
Ammon's horn1
adipose tissue1
adrenal gland1
bladder (urinary bladder)1
dorsolateral prefrontal cortex1
esophagus1
gastric (mucosa of stomach)1
lung1
ovary1
right cardiac atrium1
sigmoid colon1
small intestine1
spleen1
thymus1
cell line
EndoC_BH1221
early embryonic cell2
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)211
lymphocyte of B lineage (iPSC)111
embryonic stem cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
primary cell
endothelial cell of umbilical vein1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego