Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 545total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 22ATAC-seq
  • 18single cell RNA-seq
  • 8ChIP-seq
  • 6WGBS
  • 3snDrop-seq
  • 2pCHi-C
Assay category
  • 563Transcription
  • 49DNA accessibility
  • 8DNA binding
  • 6DNA methylation
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 715February, 2021
  • 409August, 2017
  • 406November, 2017
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 572bam
  • 559tsv
  • 551bigWig
  • 89txt
  • 45fastq
  • 23bed narrowPeak
  • 8tagAlign
  • 6csv
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
Organism
  • 715Homo sapiens
Biosample type
  • 545tissue
  • 96cell line
  • 48primary cell
  • 26in vitro differentiated cells
Organ
  • 455connective tissue
  • 386adipose tissue
  • 150bone element
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • 32epithelium
  • 32pancreas
  • 8kidney
  • 8skeleton
  • 6limb
  • 3liver
Project
  • 670AMP
  • 45HPAP
Genome assembly (visualization)
  • 574hg19
  • 568GRCh38
Lab
  • 670AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 128inconsistent ontology term
  • 32audit script error
  • 1inconsistent replicate
files.platform.term_name!
  • Applied Biosystems SOLiD System 3 Plus
BIOSAMPLE
ASSAY

715 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
visceral abdominal adipose tissue3
cell line
smooth muscle cell of the coronary artery5286
EndoC_BH126
HepG211
iPSC derived cell line2
primary cell
Langerhans cell2712
pancreatic alpha cell6
osteoblast111
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte44
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego