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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 288ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
  • 5ATAC-seq
  • 5DNase-seq
  • 1FAIRE-seq
Assay category
  • 288DNA binding
  • 89Transcription
  • 15DNA methylation
  • 11DNA accessibility
Target of assay
  • 199histone modification
  • 198histone
  • 109broad histone mark
  • 88narrow histone mark
  • 48control
  • 41transcription factor
  • 8RNA binding protein
  • 1chromatin remodeller
Date released
  • 715February, 2021
  • 406November, 2017
  • 403August, 2017
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 279fastq
  • 274bam
  • 266bigWig
  • 136bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 29bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 396Homo sapiens
Biosample type
  • 284tissue
  • 60in vitro differentiated cells
  • 59primary cell
Organ
  • 188pancreas
  • 117connective tissue
  • 57adipose tissue
  • 54liver
  • 29epithelium
  • 26musculature of body
Project
  • 403AMP
Genome assembly (visualization)
  • 270hg19
  • 243GRCh38
Lab
  • 403AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • HiSeq 1500
BIOSAMPLE
ASSAY

403 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans428911
liver4831
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas14
in vitro differentiated cells
adipocyte591
primary cell
skeletal muscle myoblast1512
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
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