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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
  • 22ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 128DNA binding
  • 39DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 75transcription factor
  • 38control
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 48December, 2017
  • 21August, 2017
  • 16February, 2021
  • 12May, 2022
  • 10January, 2019
  • 5January, 2018
  • 5November, 2018
  • 5September, 2017
  • 1December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 166fastq
  • 144bam
  • 110bigWig
  • 92bed narrowPeak
  • 76bigBed narrowPeak
  • 13zippedFastqFolder
  • 11bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 179Homo sapiens
Biosample type
  • 64cell line
  • 57tissue
  • 37primary cell
  • 18in vitro differentiated cells
  • 3stem cell
Organ
  • 105liver
  • 28pancreas
  • 21epithelium
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 2adipose tissue
  • 1brain
Project
  • 150AMP
  • 29HPAP
Genome assembly (visualization)
  • 104hg19
  • 99GRCh38
  • 5hg18
Lab
  • 149AMP-T2D consortium
  • 29Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 19inconsistent control read length
files.platform.term_name!
  • HiSeq HighOutput V4
BIOSAMPLE
ASSAY

179 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
tissue
liver46
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
primary cell
Langerhans cell161
pancreatic alpha cell9
pancreatic beta cell6
pancreatic acinar cell5
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
stem cell
hESC21
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