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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 163ChIP-seq
  • 130total RNA-seq
  • 85single cell RNA-seq
  • 72ATAC-seq
  • 37snATAC-seq
  • 10DNase-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 163DNA binding
  • 119DNA accessibility
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 110August, 2017
  • 90May, 2022
  • 44November, 2017
  • 41September, 2018
  • 40November, 2018
  • 37October, 2018
  • 33December, 2018
  • 28February, 2021
  • 25September, 2020
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 438fastq
  • 373bam
  • 318bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 140tsv
  • 67zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 504Homo sapiens
Biosample type
  • 202tissue
  • 196primary cell
  • 104cell line
  • 2in vitro differentiated cells
Organ
  • 221pancreas
  • 83epithelium
  • 80liver
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 378AMP
  • 126HPAP
Genome assembly (visualization)
  • 321hg19
  • 315GRCh38
Lab
  • 352AMP-T2D consortium
  • 126Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 16audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • HiSeq HighOutput V4
BIOSAMPLE
ASSAY

504 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans9720
body of pancreas13422
spleen13112
liver132
subcutaneous adipose tissue121
primary cell
Langerhans cell6737
pancreatic alpha cell10319
pancreatic beta cell10213
pancreatic acinar cell428
pancreatic ductal cell424
cell line
HepG252511
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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