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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
47
WGBS
37
snATAC-seq
22
ATAC-seq
3
Hi-C
Assay category
177
Transcription
59
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
107
May, 2022
76
February, 2023
59
September, 2020
34
February, 2021
7
August, 2020
3
October, 2022
Available data
158
fastq
126
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
286
Homo sapiens
Biosample type
286
primary cell
Organ
125
epithelium
125
pancreas
Project
286
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
286
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
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files.platform.term_name!
HiSeq HighOutput V4
BIOSAMPLE
ASSAY
286 results
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total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
37
pancreatic alpha cell
42
31
13
1
exocrine cell
39
pancreatic beta cell
11
16
6
1
pancreatic acinar cell
3
1
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