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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1459total RNA-seq
  • 366single cell RNA-seq
  • 87RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 7ChIP-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 1847Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 649February, 2021
  • 186August, 2021
  • 182May, 2021
  • 168July, 2018
  • 145May, 2020
  • 96August, 2017
  • 95February, 2023
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10April, 2020
  • 10December, 2019
  • 4March, 2023
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
  • 1October, 2022
Available data
  • 1478tsv
  • 1342bam
  • 1337bigWig
  • 373fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1947Homo sapiens
Biosample type
  • 1325tissue
  • 374primary cell
  • 138in vitro differentiated cells
  • 123cell line
  • 2stem cell
Organ
  • 497pancreas
  • 476connective tissue
  • 401adipose tissue
  • 204epithelium
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 10lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1664AMP
  • 177HPAP
  • 60T1D
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1338hg19
  • 1336GRCh38
Lab
  • 1549AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 226inconsistent ontology term
  • 9audit script error
Audit category:
  • 1inconsistent assembly
files.platform.term_name!
  • HiSeq HighOutput V4
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1962 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
ChIP-seq
STARR-seq
snDrop-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16711
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13361
HepG292
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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