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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 199DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 81histone
  • 81histone modification
  • 72transcription factor
  • 46control
  • 43broad histone mark
  • 38narrow histone mark
  • 16RNA binding protein
  • 16chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 76November, 2017
  • 60August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 4September, 2017
  • 1January, 2019
Available data
  • 214fastq
  • 208bam
  • 167bigWig
  • 158bed narrowPeak
  • 114bigBed narrowPeak
  • 84bed broadPeak
  • 76bigBed broadPeak
  • 38tagAlign
  • 27bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 208Homo sapiens
Biosample type
  • 82cell line
  • 46tissue
  • 44in vitro differentiated cells
  • 40primary cell
  • 2stem cell
Organ
  • 91liver
  • 41pancreas
  • 27epithelium
  • 18embryo
  • 13brain
  • 4connective tissue
  • 3adipose tissue
  • 2musculature of body
  • 2vasculature
  • 1blood
  • 1blood vessel
  • 1bodily fluid
  • 1spleen
Project
  • 214AMP
Genome assembly (visualization)
  • 176hg19
  • 151GRCh38
Lab
  • 214AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

214 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG281
GM128781
tissue
brain92
liver621
pancreas9
islet of Langerhans8
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
primary cell
skeletal muscle myoblast1411
pancreatic alpha cell11
pancreatic beta cell11
brain microvascular endothelial cell1
choroid plexus epithelial cell1
stem cell
hESC2
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