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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
162
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
99
transcription factor
70
recombinant protein
42
histone
42
histone modification
25
broad histone mark
21
control
17
narrow histone mark
11
chromatin remodeller
8
RNA binding protein
3
other context
3
other post-translational modification
Date released
71
November, 2017
29
October, 2018
26
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
1
August, 2017
Available data
172
fastq
162
bam
150
bigWig
140
bed narrowPeak
140
bigBed narrowPeak
1
zippedFastqFolder
Organism
173
Homo sapiens
Biosample type
98
cell line
48
tissue
15
in vitro differentiated cells
12
primary cell
Organ
109
liver
30
pancreas
25
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
9
connective tissue
Project
162
AMP
11
HPAP
Genome assembly (visualization)
150
GRCh38
137
hg19
Lab
162
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.platform.term_name!
Illumina Genome Analyzer
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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