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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 591ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 2DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 591DNA binding
  • 209Transcription
  • 10DNA methylation
  • 5DNA accessibility
Target of assay
  • 293transcription factor
  • 184histone
  • 184histone modification
  • 112control
  • 97broad histone mark
  • 86narrow histone mark
  • 82recombinant protein
  • 55RNA binding protein
  • 24chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 223November, 2017
  • 135August, 2017
  • 90December, 2017
  • 76February, 2023
  • 48November, 2018
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 21October, 2018
  • 17January, 2019
  • 10October, 2017
  • 5January, 2018
  • 4September, 2017
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 802fastq
  • 696bam
  • 591bigWig
  • 432bed narrowPeak
  • 330bigBed narrowPeak
  • 98tsv
  • 79bed broadPeak
  • 71bigBed broadPeak
  • 39bed bed3+
  • 38tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
Organism
  • 814Homo sapiens
Biosample type
  • 276primary cell
  • 273cell line
  • 159tissue
  • 108in vitro differentiated cells
  • 4stem cell
Organ
  • 333liver
  • 243pancreas
  • 177epithelium
  • 43connective tissue
  • 27embryo
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 13brain
  • 7spleen
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
Project
  • 709AMP
  • 111HPAP
Genome assembly (visualization)
  • 587hg19
  • 566GRCh38
  • 5hg18
Lab
  • 709AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 77missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

820 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
cell line
HepG2258
GM1287815
tissue
liver5211
islet of Langerhans1861
body of pancreas20
pancreas1321
white adipose tissue12
in vitro differentiated cells
pancreatic endoderm1841
adipocyte22
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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