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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 253ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
  • 5ATAC-seq
  • 4DNase-seq
  • 1FAIRE-seq
Assay category
  • 253DNA binding
  • 89Transcription
  • 15DNA methylation
  • 10DNA accessibility
Target of assay
  • 167histone modification
  • 166histone
  • 93broad histone mark
  • 72narrow histone mark
  • 48control
  • 38transcription factor
  • 2RNA binding protein
  • 2chromatin remodeller
Date released
  • 715February, 2021
  • 399May, 2021
  • 367August, 2017
  • 348November, 2017
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 74October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 10December, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 243fastq
  • 238bam
  • 230bigWig
  • 100bed narrowPeak
  • 89tsv
  • 84tagAlign
  • 39bed broadPeak
  • 39bigBed narrowPeak
  • 23bed bed3+
  • 14bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 361Homo sapiens
Biosample type
  • 272tissue
  • 58primary cell
  • 37in vitro differentiated cells
Organ
  • 178pancreas
  • 94connective tissue
  • 57adipose tissue
  • 52liver
  • 29epithelium
  • 26musculature of body
Project
  • 367AMP
Genome assembly (visualization)
  • 233hg19
  • 206GRCh38
Lab
  • 367AMP-T2D consortium
Audit category:
  • 38missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

367 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans34891
liver4631
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas13
primary cell
skeletal muscle myoblast1412
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
in vitro differentiated cells
adipocyte361
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