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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 211ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 211DNA binding
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 184histone
  • 184histone modification
  • 114narrow histone mark
  • 70broad histone mark
  • 28control
  • 2RNA binding protein
  • 2transcription factor
Date released
  • 86October, 2019
  • 84November, 2017
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 236bam
  • 215bigWig
  • 199bed narrowPeak
  • 123bigBed narrowPeak
  • 118tagAlign
  • 43bed broadPeak
  • 35bed bed3+
  • 34bigBed broadPeak
  • 26tsv
  • 14fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 279Homo sapiens
Biosample type
  • 265tissue
  • 14primary cell
Organ
  • 932pancreas
  • 738liver
  • 653connective tissue
  • 520epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 279brain
  • 232vasculature
  • 228blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 279AMP
Genome assembly (visualization)
  • 213GRCh38
  • 157hg19
Lab
  • 279AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

279 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain2014111
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
brain microvascular endothelial cell111
choroid plexus epithelial cell111
astrocyte of the cerebellum11
brain pericyte11
cerebellar granule cell2
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