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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 499ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 499DNA binding
  • 193Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 296transcription factor
  • 100control
  • 100histone modification
  • 99histone
  • 82recombinant protein
  • 59narrow histone mark
  • 53RNA binding protein
  • 40broad histone mark
  • 23chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 264November, 2017
  • 194May, 2020
  • 63December, 2017
  • 53November, 2018
  • 52August, 2017
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 628bam
  • 570bigWig
  • 412fastq
  • 396bed narrowPeak
  • 314bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 60bed broadPeak
  • 60bigBed broadPeak
  • 11bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 738Homo sapiens
Biosample type
  • 359tissue
  • 350cell line
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 932pancreas
  • 738liver
  • 653connective tissue
  • 520epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 279brain
  • 232vasculature
  • 228blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 738AMP
Genome assembly (visualization)
  • 572hg19
  • 506GRCh38
Lab
  • 667AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 8missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

738 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver143167202311111
right lobe of liver1031212
cell line
HepG232714112221
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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