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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 98ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 98DNA binding
  • 67Transcription
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 69histone
  • 69histone modification
  • 45broad histone mark
  • 24narrow histone mark
  • 20control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 4March, 2020
  • 3February, 2020
  • 2November, 2017
Available data
  • 181bam
  • 151bigWig
  • 131bed narrowPeak
  • 81bigBed narrowPeak
  • 68tsv
  • 15bed broadPeak
  • 15bigBed broadPeak
  • 13bed bed3+
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2fastq
  • 2hdf5
  • 1tar
Organism
  • 232Homo sapiens
Biosample type
  • 133tissue
  • 66cell line
  • 33primary cell
Organ
  • 932pancreas
  • 738liver
  • 653connective tissue
  • 520epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 279brain
  • 232vasculature
  • 228blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 232AMP
Genome assembly (visualization)
  • 189GRCh38
  • 161hg19
Lab
  • 232AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

232 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery51362
tibial artery23112
aorta1314121
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell111
choroid plexus epithelial cell111
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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