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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 483ChIP-seq
Assay category
  • 483DNA binding
Target of assay
  • 979histone modification
  • 978histone
  • 494narrow histone mark
  • 483broad histone mark
  • 462transcription factor
  • 328control
  • 101RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 93August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 48November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2019
  • 4January, 2019
Available data
  • 409bigWig
  • 402bed narrowPeak
  • 360bam
  • 240bigBed narrowPeak
  • 147tagAlign
  • 100fastq
  • 34bed broadPeak
  • 14bigBed broadPeak
  • 8bed bed3+
Organism
  • 479Homo sapiens
Biosample type
  • 299tissue
  • 122primary cell
  • 44in vitro differentiated cells
  • 17cell line
  • 1stem cell
Organ
  • 74pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44epithelium
  • 40liver
  • 34limb
  • 32connective tissue
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
  • 4spleen
Project
  • 439AMP
  • 44T1D
Genome assembly (visualization)
  • 374GRCh38
  • 353hg19
Lab
  • 388AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

483 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
embryonic stem cell11
adipocyte8
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
cell line
HepG27
EndoC_BH16
Panc14
stem cell
hESC1
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